CRISPR-Cas type III-D effector complex
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8s9t
Q-score: 0.623
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a target RNA
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8s9u
Q-score: 0.584
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
To Be Published
- Crispr-cas type iii-d effector complex bound to target rna (351 kDa, Complex from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8s9v
Q-score: 0.561
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
- Water (18 Da, Ligand)
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Magnesium ion (24 Da, Ligand)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8s9x
Q-score: 0.456
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
- Crispr rna (11 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas7-cas5-cas11 (87 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7-2x (56 kDa, Protein from Synechocystis sp. PCC 6803)
- Self-target rna (19 kDa, RNA from Synechocystis sp. PCC 6803)
- Cas10 (64 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03986 family crispr-associated ramp protein (90 kDa, Protein from Synechocystis sp. PCC 6803)
- Tigr03984 family crispr-associated protein (21 kDa, Protein from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex consensus map
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
- Crispr-cas type iii-d effector complex (332 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex local refinement map
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
- Crispr-cas type iii-d effector complex (351 kDa, Complex from Synechocystis sp. PCC 6803)
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Schwartz EA, Bravo JPK, Ahsan F, Macias LA, Brodbelt JS, Palermo G, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2024) [ DOI: doi:10.1038/s41467-024-47506-y ]
Structure of type I-D Cascade bound to a dsDNA target
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7sba
Q-score: 0.453
Schwartz EA, McBride TM, Bravo JPK, Wrapp D, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2022) 13 pp. 2829-2829 [ Pubmed: 35595728 DOI: doi:10.1038/s41467-022-30402-8 ]
- Cas11d (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10d (112 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7d (36 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas5d (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Dna non-target strand (3 kDa, DNA from synthetic construct)
- Crrna (13 kDa, RNA from Synechocystis sp. PCC 6803)
- Dna target strand (4 kDa, DNA from synthetic construct)
- Type i-d cascade bound to a dsdna target (480 kDa, Complex)
Structure of type I-D Cascade bound to a ssRNA target
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7sbb
Q-score: 0.433
Schwartz EA, McBride TM, Bravo JPK, Wrapp D, Fineran PC, Fagerlund RD, Taylor DW
Nat Commun (2022) 13 pp. 2829-2829 [ Pubmed: 35595728 DOI: doi:10.1038/s41467-022-30402-8 ]
- Cas11d (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas10d (112 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas7d (36 kDa, Protein from Synechocystis sp. PCC 6803)
- Cas5d (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Ssrna target (10 kDa, RNA from synthetic construct)
- Crrna (13 kDa, RNA from Synechocystis sp. PCC 6803)
- Type i-d cascade bound to a ssrna target (450 kDa, Complex)